Microarray Data Analysis
What would you like to do?
Collect, annotate, manage, and share your own microarray data
Download microarray data from other studies
Access microarray-based gene expression data, images, SNPs, and patient outcome data from multiple studies
(Available through NCI-hosted instance of caIntegrator)
Access microarray gene expression data across a variety of cancers
(Available through NCI-hosted instance of caArray)
- Learn more about caArray
- Review a complete list of all available microarray datasets
- Register for free access to download and analyze this data
Sample Data: GlaxoSmithKline has generated and donated SNP and expression data for over 300 cancer cell lines and made this information available through caArray.
Prepare microarray data for analysis
Pre-process microarray data
(Available through Bioconductor)
Pre-process microarray data to reduce noise and artifacts
(Available through caCorrect)
Conduct analysis of your own microarray data
Conduct in silico research
Correlate genomic and expression data with outcomes using analytical tools from the NCI-hosted instance of caIntegrator and data from The Cancer Genome Atlas (TCGA), Therapeutically Applicable Research to Generate Effective Treatments (TARGET), Repository for Molecular Brain Neoplasia Data (REMBRANDT), the Director's Challenge Lung Cancer Study, and the CoCaNUT colon cancer study.
Examine gene and chromosomal information, analyze expression data, and correlate this information with clinical outcomes data from The Cancer Genome Atlas (TCGA), Repository for Molecular Brain Neoplasia Data (REMBRANDT), and Therapeutically Applicable Research to Generate Effective Treatments (TARGET) programs using the caBIG® Molecular Analysis Portal (CMA).
Examine gene expression, gene copy number data, and clinical outcomes from glioma patients using the Repository for Molecular Brain Neoplasia Data (REMBRANDT).